Wednesday 19 June 2013

CSM 2013, Carleton University

Below is a collection of links to papers and software discussed during my CSM 2013 talk ("Automated analysis of large ribosomal RNA gene datasets"). If you have any questions or comments, feel free to post below or contact me directly. Thanks for listening.

- Michael

Articles:


Lynch, M.D.J., A.P. Masella, M.W. Hall, A.K. Bartram and J.D. Neufeld. 2013. AXIOME: automated exploration of microbial diversity. GigaScience 2:3.
doi:10.1186/2047-217X-2-3

Stearns, J.C., M.D.J. Lynch, D.B. Senadheera, H.C. Tenenbaum, M.B. Goldberg, D.G. Cvitkovitch, K. Croitoru, G. Moreno-Hagelsieb, and J.D. Neufeld. 2011. Bacterial biogeography of the human digestive tract. Scientific Reports 1:170.
doi:10.1038/srep00170

Bartram, A.K., M.D.J. Lynch, J.C. Stearns, G. Moreno-Hagelsieb, and J.D. Neufeld. 2011. Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads. Applied and Environmental Microbiology 77:3846-3852. 

Lynch, M.D.J., A.K. Bartram and J.D. Neufeld. 2012. Targeted recovery of novel phylogenetic diversity from next-generation sequence data. ISME Journal 6:2067-2077.
doi: 10.1038/ismej.2012.50

Software:

AXIOME (Automation, Extension, and Integration Of Microbial Ecology):
http://neufeld.github.io/AXIOME/